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Image Search Results
Journal: Viruses
Article Title: The Phage-Encoded N -Acetyltransferase Rac Mediates Inactivation of Pseudomonas aeruginosa Transcription by Cleavage of the RNA Polymerase Alpha Subunit
doi: 10.3390/v12090976
Figure Lengend Snippet: Determination of cleavage site within C-terminal domain (α CTD). ( A ) The cleaved α CTD was purified from phage-infected cells using the C-terminally fused Strep II TM -tag (WSHPQFEK) and subjected to Fourier mass spectrometry (APEX-Qe, Bruker Daltonics). The protein mass (including the tag) was calculated from the spectrum (in green) to be 11,157.87 Da, corresponding to the RpoA fragment indicated in bold in the primary sequence. The bottom figure (in black) represents the theoretical spectrum of this α CTD fragment, with a predicted mass of 11,152.96 Da. The cleavage site is located in the flexible linker sequence connecting the two functional domains. ( B ) Alternative determination of cleavage site within the α CTD domain. The entire RNAP complex was purified from phage-infected cells, separated on SDS-PAGE (left panel) and subjected to MALDI-TOF mass spectrometry (right panel). The relevant m/z range is shown. After ten minutes of infection, we noticed the disappearance of the peak corresponding to the original α subunit (38,835 Da), while a single alternative peak at 26,712 ± 1 Da appeared. This mass allowed us to determine the cleavage site within the flexible linker. ( C ) The different domains of RpoA are shown with the exact position of the cleavage site.
Article Snippet: To determine the mass of the
Techniques: Purification, Infection, Mass Spectrometry, Sequencing, Functional Assay, SDS Page